PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.37JVZ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 295aa    MW: 33372.1 Da    PI: 6.9354
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.37JVZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05131150120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  n++ H+
  Aradu.37JVZ 131 FSCPVCYKTFNRYNNMQMHM 150
                  89*****************9 PP

2zf-C2H214.88e-05215237123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  Aradu.37JVZ 215 FMCRKCGKAFAVRGDWRTHEKNC 237
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.18E-6100153No hitNo description
Gene3DG3DSA:3.30.160.604.9E-6131150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-6196235No hitNo description
Gene3DG3DSA:3.30.160.607.5E-6211235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808215235IPR007087Zinc finger, C2H2
SMARTSM0035549215235IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDTSFVLVHD KMEEDIRIYG GRNKPKGEAK GEDDNNDEEE DNNNSVTVAL HIGLPNPSAA  60
ELATITSMES SSNNNNNSNS SSTEKEQHHH EEEGEGSEES QCHKGFLGTR LNKGQYWIPT  120
PTQILIGPTQ FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT GMLRLPCYCC  180
APGCRNNIDH PRSKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL  240
WYCICGSDFK HKRSLKDHIK AFGSGHAALG IHGGLFEEEE EPASEVEQDN DELNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015949813.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-138ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0B2R2U91e-148A0A0B2R2U9_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBLI1N9351e-148I1N935_SOYBN; Uncharacterized protein
STRINGGLYMA19G32430.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-123C2H2 family protein